PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1259
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 305aa    MW: 34948.9 Da    PI: 7.4236
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1259genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.53.6e-18170253282
     trihelix   2 WtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkryk..kikegekkrtsessstcpyf 82 
                  W++ ev  L+++r+ me+++++   + +  lWee+++km   gfers  +Ck+kw+ + + y   k+ke++kkr +e+s+ + y+
  Gh_D01G1259 170 WQEAEVSRLLQLRTAMETKFQQvgYSEEVVLWEEIAAKMGCLGFERSGLMCKDKWDTIGGAYTlmKTKESNKKR-KENSRGFDYY 253
                  *********************9434799**********************************833555556655.6666666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-5161226IPR009057Homeodomain-like
PROSITE profilePS500906.423162228IPR017877Myb-like domain
PfamPF138372.0E-12169253No hitNo description
CDDcd122036.45E-15170227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAXQNSINTQ ANQEIYHSQK LCSDSLSLSS SSKFDTCSSD NNDLSTAKLK KKRGCRSWKA  60
KIKEFIDSQI GKLMERQEAW LVKLTKTLEE KEQERVLREE QWRKEAAIRI DREHKFWAKE  120
RAWIEARDAA LMEALQNLAG KQLKAASSDG ENHNENGNGT INHTVKADGW QEAEVSRLLQ  180
LRTAMETKFQ QVGYSEEVVL WEEIAAKMGC LGFERSGLMC KDKWDTIGGA YTLMKTKESN  240
KKRKENSRGF DYYQPNETIF TQGPETLRLQ PNDGSSHAVS DSCFRFFMAD GDNNLWENYG  300
LKLSN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.2090.0boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO841731400.0
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467038.10.0PREDICTED: trihelix transcription factor PTL
SwissprotQ9LZS01e-65PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A0D2R6Z40.0A0A0D2R6Z4_G
STRINGVIT_08s0007g03820.t011e-111(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-55Trihelix family protein